Eric C Rouchka: search on Z-Library

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1

[IEEE 2008 Seventh International Conference on Machine Learning and Applications - San Diego, CA, USA (2008.12.11-2008.12.13)] 2008 Seventh International Conference on Machine Learning and Applications - Model Based Unsupervised Learning Guided by Abundant Background Samples

Mahdi, Rami N., Rouchka, Eric C.

Year:

2008

Language:

english

File:

PDF, 569 KB

english, 2008

2

Nuclear respiratory factor-1 and bioenergetics in tamoxifen-resistant breast cancer cells

Radde, Brandie N., Ivanova, Margarita M., Mai, Huy Xuan, Alizadeh-Rad, Negin, Piell, Kellianne, Van Hoose, Patrick, Cole, Marsha P., Muluhngwi, Penn, Kalbfleisch, Ted S., Rouchka, Eric C., Hill, Bradf

Journal:

Experimental Cell Research

Year:

2016

Language:

english

File:

PDF, 703 KB

english, 2016

3

Detecting and accounting for multiple sources of positional variance in peak list registration analysis and spin system grouping

Smelter, Andrey, Rouchka, Eric C., Moseley, Hunter N. B.

Journal:

Journal of Biomolecular NMR

Year:

2017

Language:

english

File:

PDF, 3.25 MB

english, 2017

4

Glial granules contain germline proteins in the Drosophila brain, which regulate brain transcriptome

Tindell, Samuel J., Rouchka, Eric C., Arkov, Alexey L.

Journal:

Communications Biology

Year:

2020

File:

PDF, 5.04 MB

2020

5

categoryCompare: high-throughput data meta-analysis using gene annotations

Robert M Flight, Jeffrey C Petruska, Benjamin J Harrison, Eric C Rouchka

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 157 KB

english, 2011

6

Pas de deux : An Intricate Dance of Anther Smut and Its Host

Toh, Su San, Chen, Zehua, Rouchka, Eric C., Schultz, David J., Cuomo, Christina A., Perlin, Michael H.

Journal:

G3 Genes|Genome|Genetics

Year:

2017

Language:

english

File:

PDF, 7.32 MB

english, 2017

7

Discovery of a Family of Genomic Sequences Which Interact Specifically with the c-MYC Promoter to Regulate c-MYC Expression

Rezzoug, Francine, Thomas, Shelia D., Rouchka, Eric C., Miller, Donald M., Ray, Ratna B.

Journal:

Year:

2016

Language:

english

File:

PDF, 4.78 MB

english, 2016

8

Improved locomotor recovery after contusive spinal cord injury in Bmal1â/â mice is associated with protection of the blood spinal cord barrier

Slomnicki, Lukasz P., Myers, Scott A., Saraswat Ohri, Sujata, Parsh, Molly V., Andres, Kariena R., Chariker, Julia H., Rouchka, Eric C., Whittemore, Scott R., Hetman, Michal

Journal:

Scientific Reports

Year:

2020

File:

PDF, 7.68 MB

2020

9

[ACM Press the International Conference - Wshington DC, USA (2013.09.22-2013.09.25)] Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics - BCB'13 - An Island-Based Approach for Differential Expression Analysis

Eteleeb, Abdallah M., Flight, Robert M., Harrison, Benjamin J., Petruska, Jeffrey C., Rouchka, Eric C.

Year:

2007

Language:

english

File:

PDF, 1.66 MB

english, 2007

10

rMAPS: RNA map analysis and plotting server for alternative exon regulation

Park, Juw Won, Jung, Sungbo, Rouchka, Eric C., Tseng, Yu-Ting, Xing, Yi

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 2.26 MB

english, 2016

11

Identification of successful mentoring communities using network-based analysis of mentor–mentee relationships across Nobel laureates

Chariker, Julia H., Zhang, Yihang, Pani, John R., Rouchka, Eric C.

Journal:

Year:

2017

Language:

english

File:

PDF, 927 KB

english, 2017

12

Correction to: Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2017: bioinformatics

Rouchka, Eric C., Chariker, Julia L., Tieri, David, Park, Juw W.

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 240 KB

english, 2017

13

Whole Transcriptome Analysis Reveals That Filifactor alocis Modulates TNFÎ±-Stimulated MAPK Activation in Human Neutrophils

Miralda, Irina, Vashishta, Aruna, Rogers, Max N., Rouchka, Eric C., Li, Xiaohong, Waigel, Sabine, Lamont, Richard J., Uriarte, Silvia M.

Journal:

Frontiers in Immunology

Year:

2020

File:

PDF, 4.62 MB

2020

14

Aberrant coordination geometries discovered in the most abundant metalloproteins

Yao, Sen, Flight, Robert M., Rouchka, Eric C., Moseley, Hunter N.B.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2017

Language:

english

File:

PDF, 3.67 MB

english, 2017

15

Dietary Copper-Fructose Interactions Alter Gut Microbial Activity in Male Rats

Song, Ming, Li, Xiaohong, Zhang, Xiang, Shi, Hongxue, Vos, Miriam B., Wei, Xiaoli, Wang, Yuhua, Gao, Hong, Rouchka, Eric C, Yin, Xinmin, Zhou, Zhanxiang, Prough, Russell A., Cave, Matthew C., McClain,

Journal:

American Journal of Physiology - Gastrointestinal and Liver Physiology

Year:

2017

Language:

english

File:

PDF, 1.71 MB

english, 2017

16

Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics

Rouchka, Eric C., Chariker, Julia H., Tieri, David A., Park, Juw Won, Rajurkar, Shreedharkumar, Singh, Vikas, Verma, Nishchal K., Cui, Yan, Farman, Mark, Condon, Bradford, Moore, Neil, Jaromczyk, Jerz

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 922 KB

english, 2017

17

categoryCompare, an analytical tool based on feature annotations

Flight, Robert M., Harrison, Benjamin J., Mohammad, Fahim, Bunge, Mary B., Moon, Lawrence D. F., Petruska, Jeffrey C., Rouchka, Eric C.

Journal:

Frontiers in Genetics

Year:

2014

Language:

english

File:

PDF, 1.57 MB

english, 2014

18

Shoc2-tranduced ERK1/2 motility signals — Novel insights from functional genomics

Jeoung, Myoungkun, Jang, Eun Ryoung, Liu, Jinpeng, Wang, Chi, Rouchka, Eric C., Li, Xiaohong, Galperin, Emilia

Journal:

Cellular Signalling

Year:

2016

Language:

english

File:

PDF, 3.76 MB

english, 2016

19

Transcriptional changes in sensory ganglia associated with primary afferent axon collateral sprouting in spared dermatome model

Harrison, Benjamin J., Venkat, Gayathri, Hutson, Thomas, Rau, Kristofer K., Bunge, Mary Bartlett, Mendell, Lorne M., Gage, Fred H., Johnson, Richard D., Hill, Caitlin, Rouchka, Eric C., Moon, Lawrence

Journal:

Year:

2015

Language:

english

File:

PDF, 302 KB

english, 2015

20

Transcriptomic response of breast cancer cells to anacardic acid

Schultz, David J., Krishna, Abirami, Vittitow, Stephany L., Alizadeh-Rad, Negin, Muluhngwi, Penn, Rouchka, Eric C., Klinge, Carolyn M.

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 2.31 MB

english, 2018

21

Choice of library size normalization and statistical methods for differential gene expression analysis in balanced two-group comparisons for RNA-seq studies

Li, Xiaohong, Cooper, Nigel G. F., OâToole, Timothy E., Rouchka, Eric C.

Journal:

Year:

2020

Language:

english

File:

PDF, 2.86 MB

english, 2020

22

[IEEE 2008 51st IEEE International Midwest Symposium on Circuits and Systems (MWSCAS) - Knoxville, TN, USA (2008.08.10-2008.08.13)] 2008 51st Midwest Symposium on Circuits and Systems - Toward DNA-based security circuitry: First step — random number generation

Bogard, Christy M., Arazi, Benjamin, Rouchka, Eric C.

Year:

2008

Language:

english

File:

PDF, 437 KB

english, 2008

23

[ACM Press the 5th ACM Conference - Newport Beach, California (2014.09.20-2014.09.23)] Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB '14 - A comparison of combined p-value methods for gene differential expression using RNA-seq data

Eteleeb, Abdallah M., Moseley, Hunter N., Rouchka, Eric C.

Year:

2014

Language:

english

File:

PDF, 2.19 MB

english, 2014

24

Identification of G-quadruplex forming sequences in three manatee papillomaviruses

Zahin, Maryam, Dean, William L., Ghim, Shin-je, Joh, Joongho, Gray, Robert D., Khanal, Sujita, Bossart, Gregory D., Mignucci-Giannoni, Antonio A., Rouchka, Eric C., Jenson, Alfred B., Trent, John O.,

Journal:

Year:

2018

Language:

english

File:

PDF, 8.04 MB

english, 2018

25

Transcriptome of dorsal root ganglia caudal to a spinal cord injury with modulated behavioral activity

Chariker, Julia H., Gomes, Cynthia, Brabazon, Fiona, Harman, Kathryn A., Ohri, Sujata Saraswat, Magnuson, David S. K., Whittemore, Scott R., Petruska, Jeffrey C., Rouchka, Eric C.

Journal:

Scientific Data

Year:

2019

File:

PDF, 1.26 MB

2019

26

rMAPS2: an update of the RNA map analysis and plotting server for alternative splicing regulation

Hwang, Jae Y, Jung, Sungbo, Kook, Tae L, Rouchka, Eric C, Bok, Jinwoong, Park, Juw W

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 2.32 MB

2020

27

Meta-analysis of gene expression changes in response to radiation exposure

John Kirtley, Eric C Rouchka, Robert M Flight, Palaniappan Sethu, John W Eaton, Robert S Keynton, The University of Louisville Research Group for Diagnosing and Mitigating Human Exposure to Radiation

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 155 KB

english, 2011

28

Techniques for the analysis of trichomePelagonium xhortorumexpressed sequence tags

Joseph Morris, Eric Rouchka, David Schultz

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 117 KB

english, 2008

29

[IEEE 2009 10th ACIS International Conference on Software Engineering, Artificial Intelligences, Networking and Parallel/Distributed Computing - Daegu, Korea (2009.05.27-2009.05.29)] 2009 10th ACIS International Conference on Software Engineering, Artificial Intelligences, Networking and Parallel/Distributed Computing - Compute Pairwise Manhattan Distance and Pearson Correlation Coefficient of Data Points with GPU

Chang, Dar-Jen, Desoky, Ahmed H., Ouyang, Ming, Rouchka, Eric C.

Year:

2009

Language:

english

File:

PDF, 220 KB

english, 2009

30

Next generation sequencing analysis of soy glyceollins and 17-β estradiol: Effects on transcript abundance in the female mouse brain

Bamji, Sanaya F., Rouchka, Eric, Zhang, Yan, Li, Xiaohong, Kalbfleisch, Ted, Corbitt, Cynthia

Journal:

Molecular and Cellular Endocrinology

Year:

2017

Language:

english

File:

PDF, 621 KB

english, 2017

31

Comparative gene expression analysis in melanocytes driven by tumor cell-derived exosomes

Xiao, Deyi, Li, Xiaohong, Rouchka, Eric C., Waigel, Sabine, Zacharias, Wolfgang, McMasters, Kelly M., Hao, Hongying

Journal:

Experimental Cell Research

Year:

2019

Language:

english

File:

PDF, 551 KB

english, 2019

32

AbsIDconvert: An absolute approach for converting genetic identifiers at different granularities

Fahim Mohammad, Robert M Flight, Benjamin J Harrison, Jeffrey C Petruska, Eric C Rouchka

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 925 KB

english, 2012

33

[IEEE 2012 ASE/IEEE International Conference on BioMedical Computing (BioMedCom) - Washington, DC, USA (2012.12.14-2012.12.16)] 2012 ASE/IEEE International Conference on BioMedical Computing (BioMedCom) - Affymetrix® Mismatch (MM) Probes: Useful after All

Flight, Robert M., Eteleeb, Abdallah M., Rouchka, Eric C.

Year:

2012

Language:

english

File:

PDF, 424 KB

english, 2012

34

[IEEE 2010 International Conference on Machine Learning and Applications (ICMLA) - Washington, DC, USA (2010.12.12-2010.12.14)] 2010 Ninth International Conference on Machine Learning and Applications - A Bayesian Nonparametric Model for Joint Relation Integration and Domain Clustering

Li, Dazhuo, Mohammad, Fahim, Rouchka, Eric

Year:

2010

Language:

english

File:

PDF, 211 KB

english, 2010

35

[IEEE 2010 53rd IEEE International Midwest Symposium on Circuits and Systems (MWSCAS) - Seattle, WA, USA (2010.08.1-2010.08.4)] 2010 53rd IEEE International Midwest Symposium on Circuits and Systems - DNA-based dynamic logic circuitry

Gearheart, Christy M., Rouchka, Eric C., Arazi, Benjamin

Year:

2010

Language:

english

File:

PDF, 510 KB

english, 2010

36

[ACM Press the 6th ACM Conference - Atlanta, Georgia (2015.09.09-2015.09.12)] Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics - BCB '15 - A less biased analysis of metalloproteins' coordination geometries

Yao, Sen, Flight, Robert M., Rouchka, Eric C., Moseley, Hunter N. B.

Year:

2015

Language:

english

File:

PDF, 182 KB

english, 2015

37

A comparison of per sample global scaling and per gene normalization methods for differential expression analysis of RNA-seq data

Li, Xiaohong, Brock, Guy N., Rouchka, Eric C., Cooper, Nigel G. F., Wu, Dongfeng, O’Toole, Timothy E., Gill, Ryan S., Eteleeb, Abdallah M., O’Brien, Liz, Rai, Shesh N., Wei, Zhi

Journal:

Year:

2017

Language:

english

File:

PDF, 3.44 MB

english, 2017

38

Aligning DNA sequences using dynamic programming

Rouchka, Eric C.

Journal:

XRDS Crossroads The ACM Magazine for Students

Year:

2006

Language:

english

File:

PDF, 2.86 MB

english, 2006

39

Data set for transcriptional response to depletion of the Shoc2 scaffolding protein

Rouchka, Eric C., Jeoung, Myoungkun, Jang, Eun Ryoung, Liu, Jinpeng, Wang, Chi, Li, Xiaohong, Galperin, Emilia

Journal:

Year:

2016

Language:

english

File:

PDF, 219 KB

english, 2016

40

RNA-seq data of soleus muscle tissue after spinal cord injury under conditions of inactivity and applied exercise

Chariker, Julia H., Sharp, Morgan, Ohri, Sujata Saraswat, Gomes, Cynthia, Brabazon, Fiona, Harman, Kathryn A., Whittemore, Scott R., Petruska, Jeffrey C., Magnuson, David SK., Rouchka, Eric C.

Journal:

Year:

2020

File:

PDF, 1.56 MB

2020

41

Integrative biclustering of heterogeneous datasets using a Bayesian nonparametric model with application to chemogenomics

Dazhuo Li, Eric C Rouchka

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 108 KB

english, 2011

42

Proceedings of the Eleventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2012

Eric C Rouchka, Robert M Flight, Hunter NB Moseley

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 125 KB

english, 2012

43

Inorganic Arsenic-induced cellular transformation is coupled with genome wide changes in chromatin structure, transcriptome and splicing patterns

Riedmann, Caitlyn, Ma, Ye, Melikishvili, Manana, Godfrey, Steven Grason, Zhang, Zhou, Chen, Kuey Chu, Rouchka, Eric C, Fondufe-Mittendorf, Yvonne N

Journal:

Year:

2015

Language:

english

File:

PDF, 2.48 MB

english, 2015

44

Cover Image, Volume 85, Issue 5

Yao, Sen, Flight, Robert M., Rouchka, Eric C., Moseley, Hunter N.B.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2017

File:

PDF, 2.69 MB

2017

45

Leukotriene B 4 -receptor-1 mediated host response shapes gut microbiota and controls colon tumor progression

Jala, Venkatakrishna R., Maturu, Paramahamsa, Bodduluri, Sobha R., Krishnan, Elangovan, Mathis, Steven, Subbarao, Krishnaprasad, Wang, Min, Jenson, Alfred B., Proctor, Mary L., Rouchka, Eric C., Knigh

Journal:

Year:

2017

Language:

english

File:

PDF, 4.58 MB

english, 2017

46

[IEEE 2008 IEEE International Symposium on Signal Processing and Information Technology (ISSPIT) - Sarajevo, Bosnia and Herzegovina (2008.12.16-2008.12.19)] 2008 IEEE International Symposium on Signal Processing and Information Technology - Evidence of bias towards buffered codons in human transcripts

Mahdi, Rami N., Rouchka, Eric C.

Year:

2008

Language:

english

File:

PDF, 3.41 MB

english, 2008

47

Yersinia pestis Targets the Host Endosome Recycling Pathway during the Biogenesis of the Yersinia -Containing Vacuole To Avoid Killing by Macrophages

Connor, Michael G., Pulsifer, Amanda R., Chung, Donghoon, Rouchka, Eric C., Ceresa, Brian K., Lawrenz, Matthew B., Swanson, Michele S.

Journal:

Year:

2018

Language:

english

File:

PDF, 4.95 MB

english, 2018

48

Buffered codons in human transcriptional units

Rami Mahdi, Eric C Rouchka

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 123 KB

english, 2008

49

In Silico characterization of phosphorylase kinase: Evidence for an alternate intronic polyadenylation site in PHKG1

Joni S. Winchester, Eric C. Rouchka, Naomi S. Rowland, Nancy A. Rice

Journal:

Molecular Genetics and Metabolism

Year:

2007

Language:

english

File:

PDF, 773 KB

english, 2007

50

IB4-binding sensory neurons in the adult rat express a novel 3′ UTR-extended isoform of CaMK4 that is associated with its localization to axons

Harrison, Benjamin J., Flight, Robert M., Gomes, Cynthia, Venkat, Gayathri, Ellis, Steven R., Sankar, Uma, Twiss, Jeffery L., Rouchka, Eric C., Petruska, Jeffrey C.

Journal:

The Journal of Comparative Neurology

Year:

2014

Language:

english

File:

PDF, 1.56 MB

english, 2014

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